Hi there,
Stopping the Timer only disables the clock input.(As far as the block for 18F452 says). So you have to manually reset the timer registers. It is worth noting that the TMR1H registers are actually updated when you write something to the TMR1L. Thus the TMR1H should be written first. This ensures that all the 16bits get updated at the same time.
Regrads
Sougata
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