I just talked with Jeff and ME Labs and asked him if he has seen this problem and he said yes. I guess some people don't even run caps. I checked the clkout and noticed a lot of noise when the caps were in circuit. Once removed the wave was nice and smooth. I tried this will about 8 different boards and all of them had the same results. I guess it really depends on the crystals charateristics if you need the caps or not. I tried a resonator and noticed a big difference in the clkout signal. The crystal is so much more accurate.
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