Well I just re-loaded the test code that uses port C for both clock and PWM pins and that appears to do the same thing, with 10:10 shown as the time. Mind you I've been cutting and pasting bits of code from one to the other to try and resolve this.

When using CCP modules I simply used CCP1CON = %00000000 and CCP2CON = %00000000 to set the register and then used PBP HPWM command to drive the pins....

I'll drop you a PM with the code....