I can't find datasheet for MJE355. I suppose that you meant MJE3055. I would try with logic level mosfet.
One reason for getting to hot is slope, as Ioannis mention, but probably isn't that.
Other:
1) What is type of transformer core, maybe frequency is to high.
2) Is that flyback topology? Maybe core is saturated.
3) Maybe emitter collector breakdown occur, I don't see any clamp on collector.
4) Neon have very low impedance when glowing, so try to put resistor in series to limit current.
etc...


No heat from anything, but I'm not sure the 1N004 protection


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