Hey dave, thanks for the help. I had written this program with two Subroutine that I found on this site somewhere.. I will test it tonight.
Code:
CountDown:
I2CWRITE SDApin,SCLpin,$D0,$00,[$00,$00,$00,$00,$00,$00,$00,$00] ' Write to DS1307 to start counter at ZERO
Pause 20
	while RTCHour != 1

			I2CRead SDApin,SCLpin,$D0,$00,[RTCSec,RTCMin,RTCHour,RTCWDay,RTCDay,RTCMonth,RTCYear,RTCCtrl]  
			Pause 20
				'Will get the time from timer chip and do a 60 min count down
				'Also add interrupt if someone presses start to view the charge/discharge cycle
				
				TempVal=RTCSec
				GoSub BCD_TO_BIN
				Secs=TempVal

				TempVal=RTCmin
				GoSub BCD_TO_BIN
				Mins=TempVal

				Rest_seconds = 59 - Secs
				Rest_min = 59 - Mins 
				lcdout $FE,1, "Time: ", dec2 RTCHour, ":", dec2 RTCMin, ":", dec2 RTCSec
				lcdout $FE,$C0, " Dif: ", dec2 RTCHour, ":", dec2 Rest_min ,":", dec2 Rest_seconds 
				Pause 150
	Wend
return

BCD_TO_BIN:                                    ' Convert the BCD values into BIN

     Temp1 = $0F & TempVal                     ' Clear off the top four bits
     Temp1 = Temp1 Dig 0
     Temp2 = TempVal >> 4                       ' Shift down four to read 2 BCD value
     Temp2 = Temp2 Dig 0
     TempVal = Temp2 * 10 + Temp1

     Return

BIN_TO_BCD:

     Temp1 = TempVal Dig 0                     ' GET THE DEC DIGIT FOR THE FIRST NIBBLE
     Temp2 = TempVal Dig 1                     ' GET THE DEC DIGIT FOR THE FIRST NIBBLE
     Temp2 = Temp2 << 4                          ' MOVE NUMBER OVER TO 2ND NIBBLE
     TempVal = Temp1 ^ Temp2                  ' XOR THEM TOGTHER TO MAKE THE WHOLE BCD NUMBER
    
     Return