Most bootloaders will not allow you to change config settings, but the Microchip USB loader will, or you can change WDT config settings at runtime.
See these threads:
http://www.picbasic.co.uk/forum/showthread.php?t=4093
http://www.picbasic.co.uk/forum/show...ghlight=config
Or just open the loader .HEX file, make your changes, save it, and reprogram the PIC with the new loader firmware.
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