The BODEN may not be the problem but it seems like the method of setting/changing the configs is.

I have never thought it a good idea to use the programmer software ware to set the fuses for many reasons. Find a way to disable that part and set the configs either in the *.inc or in your code.
http://www.picbasic.co.uk/forum/showthread.php?t=543
You will not be able to really work with the micros until you can master the configs...pun intended